PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026827-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 173aa    MW: 18712.8 Da    PI: 10.5797
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026827-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB55.81.1e-1710104297
                  NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvq.ecvsefisfvts...easdkcqrekr.ktingddllwalatlGfedyveplk 84 
                            reqdrflPianvsrimkk   ++ kis+  +   +  c s   s  ++    as +++  +r ++  gdd      +lGfe+yv+plk
  SMil_00026827-RA_Salv  10 REQDRFLPIANVSRIMKKRSTGERKISRTPRRRCRsACRSSSASSPAKppiSASVRTEDHQRrRSSLGDD------NLGFENYVDPLK 91 
                            89*************************9988766526877777665542225666666554404445555......79********** PP

                  NF-YB  85 vylkkyrelegek 97 
                            +yl+k+r++e+ek
  SMil_00026827-RA_Salv  92 LYLQKFRDVEEEK 104
                            **********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-7847IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.3E-680116IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSRGIIGTPR EQDRFLPIAN VSRIMKKRST GERKISRTPR RRCRSACRSS SASSPAKPPI  60
SASVRTEDHQ RRRSSLGDDN LGFENYVDPL KLYLQKFRDV EEEKTVMAGR RDKDSGGDGD  120
GDADAGFYGL NVMGHQGGPV YGSYHVGATS GAAAARRGGG AGRSSRLGSF TCD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47640.14e-15nuclear factor Y, subunit B2